Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA1O95477 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.81□□□□□ -0.04
ABCA1O95477 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA1O95477 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.81□□□□□ -0.04
ABCA1O95477 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
ABCA1O95477 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA1O95477 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ABCA1O95477 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.81□□□□□ -0.04
ABCA1O95477 AC004817.3-201ENST00000602957 2129 ntBASIC14.81□□□□□ -0.04
ABCA1O95477 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ABCA1O95477 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA1O95477 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA1O95477 AC112482.1-201ENST00000492080 688 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA1O95477 RNA5SP416-201ENST00000516838 111 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 MTDHP4-201ENST00000600287 670 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 AL596442.2-201ENST00000610240 980 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 MIR1199-201ENST00000621445 119 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 AC107918.4-202ENST00000641623 219 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ABCA1O95477 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.8□□□□□ -0.04
ABCA1O95477 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA1O95477 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.8□□□□□ -0.04
ABCA1O95477 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.8□□□□□ -0.04
ABCA1O95477 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.8□□□□□ -0.04
ABCA1O95477 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.8□□□□□ -0.04
ABCA1O95477 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.8□□□□□ -0.04
ABCA1O95477 AC083906.6-201ENST00000641366 219 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 AC079781.4-201ENST00000641908 219 ntBASIC14.8□□□□□ -0.04
ABCA1O95477 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ABCA1O95477 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA1O95477 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA1O95477 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
ABCA1O95477 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA1O95477 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.79□□□□□ -0.04
ABCA1O95477 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA1O95477 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
ABCA1O95477 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ABCA1O95477 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.79□□□□□ -0.04
ABCA1O95477 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms