Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LDB3O75112 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB3O75112 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB3O75112 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.64■□□□□ 0.25
LDB3O75112 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB3O75112 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.64■□□□□ 0.25
LDB3O75112 PRELID1P1-202ENST00000567272 903 ntBASIC16.64■□□□□ 0.25
LDB3O75112 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.64■□□□□ 0.25
LDB3O75112 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.64■□□□□ 0.25
LDB3O75112 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.64■□□□□ 0.25
LDB3O75112 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.64■□□□□ 0.25
LDB3O75112 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.64■□□□□ 0.25
LDB3O75112 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.64■□□□□ 0.25
LDB3O75112 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 PCDHB18P-201ENST00000524813 2368 ntBASIC16.64■□□□□ 0.25
LDB3O75112 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.64■□□□□ 0.25
LDB3O75112 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LDB3O75112 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDB3O75112 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.64■□□□□ 0.25
LDB3O75112 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.63■□□□□ 0.25
LDB3O75112 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.63■□□□□ 0.25
LDB3O75112 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.63■□□□□ 0.25
LDB3O75112 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 RCN1P2-201ENST00000398357 915 ntBASIC16.63■□□□□ 0.25
LDB3O75112 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.63■□□□□ 0.25
LDB3O75112 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 CLEC4GP1-201ENST00000596555 870 ntBASIC16.63■□□□□ 0.25
LDB3O75112 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDB3O75112 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.63■□□□□ 0.25
LDB3O75112 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
LDB3O75112 SIRPAP1-201ENST00000448467 1770 ntBASIC16.63■□□□□ 0.25
LDB3O75112 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.63■□□□□ 0.25
LDB3O75112 OR6D1P-202ENST00000641007 5290 ntBASIC16.63■□□□□ 0.25
LDB3O75112 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 COX5BP2-201ENST00000392354 334 ntBASIC16.62■□□□□ 0.25
LDB3O75112 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 NUS1P1-201ENST00000446295 882 ntBASIC16.62■□□□□ 0.25
LDB3O75112 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.62■□□□□ 0.25
LDB3O75112 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.62■□□□□ 0.25
LDB3O75112 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 AC011467.2-201ENST00000598425 242 ntBASIC16.62■□□□□ 0.25
LDB3O75112 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.62■□□□□ 0.25
LDB3O75112 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDB3O75112 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.62■□□□□ 0.25
LDB3O75112 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDB3O75112 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.61■□□□□ 0.25
LDB3O75112 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LDB3O75112 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 FAM220CP-201ENST00000395253 831 ntBASIC16.61■□□□□ 0.25
LDB3O75112 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms