Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC007967.2-201ENST00000432613 625 ntBASIC17.94■□□□□ 0.46
HOXC11O43248 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.94■□□□□ 0.46
HOXC11O43248 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC11O43248 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
HOXC11O43248 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC11O43248 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.94■□□□□ 0.46
HOXC11O43248 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC11O43248 AC009336.1-201ENST00000608941 1553 ntBASIC17.94■□□□□ 0.46
HOXC11O43248 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC11O43248 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HOXC11O43248 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
HOXC11O43248 AC005104.2-201ENST00000427818 678 ntBASIC17.93■□□□□ 0.46
HOXC11O43248 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.93■□□□□ 0.46
HOXC11O43248 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.93■□□□□ 0.46
HOXC11O43248 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.93■□□□□ 0.46
HOXC11O43248 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HOXC11O43248 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HOXC11O43248 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HOXC11O43248 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.92■□□□□ 0.46
HOXC11O43248 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
HOXC11O43248 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 AC020916.1-201ENST00000587762 1774 ntBASIC17.92■□□□□ 0.46
HOXC11O43248 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.92■□□□□ 0.46
HOXC11O43248 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.92■□□□□ 0.46
HOXC11O43248 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.92■□□□□ 0.46
HOXC11O43248 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
HOXC11O43248 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HOXC11O43248 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HOXC11O43248 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.92■□□□□ 0.46
HOXC11O43248 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HOXC11O43248 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HOXC11O43248 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms