Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 DDX43P3-201ENST00000441064 443 ntBASIC18.08■□□□□ 0.48
CBX4O00257 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.08■□□□□ 0.48
CBX4O00257 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.08■□□□□ 0.48
CBX4O00257 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.08■□□□□ 0.48
CBX4O00257 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.48
CBX4O00257 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.08■□□□□ 0.48
CBX4O00257 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
CBX4O00257 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.08■□□□□ 0.48
CBX4O00257 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.08■□□□□ 0.48
CBX4O00257 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.08■□□□□ 0.48
CBX4O00257 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CBX4O00257 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.08■□□□□ 0.48
CBX4O00257 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 NOC2LP1-202ENST00000452600 2235 ntBASIC18.07■□□□□ 0.48
CBX4O00257 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.07■□□□□ 0.48
CBX4O00257 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CBX4O00257 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.07■□□□□ 0.48
CBX4O00257 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.07■□□□□ 0.48
CBX4O00257 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CBX4O00257 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 MRPL3P1-201ENST00000400109 1033 ntBASIC18.07■□□□□ 0.48
CBX4O00257 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
CBX4O00257 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CBX4O00257 AP002469.2-201ENST00000531724 424 ntBASIC18.07■□□□□ 0.48
CBX4O00257 SLC25A6P4-201ENST00000586535 553 ntBASIC18.07■□□□□ 0.48
CBX4O00257 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.07■□□□□ 0.48
CBX4O00257 AC023511.2-201ENST00000618803 211 ntBASIC18.07■□□□□ 0.48
CBX4O00257 REXO1L6P-202ENST00000619970 1078 ntBASIC18.07■□□□□ 0.48
CBX4O00257 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CBX4O00257 BX276092.7-203ENST00000637198 1536 ntBASIC18.07■□□□□ 0.48
CBX4O00257 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.07■□□□□ 0.48
CBX4O00257 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CBX4O00257 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.07■□□□□ 0.48
CBX4O00257 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CBX4O00257 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.07■□□□□ 0.48
CBX4O00257 SIRPAP1-201ENST00000448467 1770 ntBASIC18.07■□□□□ 0.48
CBX4O00257 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CBX4O00257 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 AC012317.2-201ENST00000623305 2251 ntBASIC18.06■□□□□ 0.48
CBX4O00257 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 AKR1C7P-201ENST00000305623 895 ntBASIC18.06■□□□□ 0.48
CBX4O00257 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.06■□□□□ 0.48
CBX4O00257 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.06■□□□□ 0.48
CBX4O00257 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CBX4O00257 SAPCD2P3-201ENST00000455031 850 ntBASIC18.06■□□□□ 0.48
CBX4O00257 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 AC122714.2-201ENST00000502787 707 ntBASIC18.06■□□□□ 0.48
CBX4O00257 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.06■□□□□ 0.48
CBX4O00257 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CBX4O00257 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.06■□□□□ 0.48
CBX4O00257 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX4O00257 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CBX4O00257 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX4O00257 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CBX4O00257 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
CBX4O00257 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.06■□□□□ 0.48
CBX4O00257 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CBX4O00257 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX4O00257 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.05■□□□□ 0.48
CBX4O00257 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX4O00257 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.05■□□□□ 0.48
CBX4O00257 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.05■□□□□ 0.48
CBX4O00257 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.05■□□□□ 0.48
CBX4O00257 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CBX4O00257 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX4O00257 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.05■□□□□ 0.48
CBX4O00257 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX4O00257 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.05■□□□□ 0.48
CBX4O00257 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.05■□□□□ 0.48
CBX4O00257 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.05■□□□□ 0.48
CBX4O00257 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms