Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 FAM207BP-201ENST00000447172 505 ntBASIC12.96□□□□□ -0.33
SMKR1H3BMG3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 RARRES2P6-201ENST00000567333 442 ntBASIC12.96□□□□□ -0.33
SMKR1H3BMG3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 AC005915.1-201ENST00000624912 2018 ntBASIC12.96□□□□□ -0.34
SMKR1H3BMG3 AC132872.4-202ENST00000622924 2756 ntBASIC12.96□□□□□ -0.34
SMKR1H3BMG3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
SMKR1H3BMG3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 PPP1R14BP5-201ENST00000440334 435 ntBASIC12.95□□□□□ -0.34
SMKR1H3BMG3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 AC233263.1-201ENST00000578059 224 ntBASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.95□□□□□ -0.34
SMKR1H3BMG3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AC036111.1-201ENST00000533973 1582 ntBASIC12.94□□□□□ -0.34
SMKR1H3BMG3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms