Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 AC004817.3-201ENST00000602957 2129 ntBASIC18.88■□□□□ 0.61
SIX4Q9UIU6 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 HLA-J-201ENST00000462773 1622 ntBASIC18.88■□□□□ 0.61
SIX4Q9UIU6 AC148477.5-201ENST00000625164 1645 ntBASIC18.88■□□□□ 0.61
SIX4Q9UIU6 AC133963.1-201ENST00000504166 1679 ntBASIC18.88■□□□□ 0.61
SIX4Q9UIU6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
SIX4Q9UIU6 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 NKAPP1-205ENST00000585790 367 ntBASIC18.87■□□□□ 0.61
SIX4Q9UIU6 SIGLEC16-201ENST00000599858 1437 ntBASIC18.87■□□□□ 0.61
SIX4Q9UIU6 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 AL356309.3-201ENST00000624132 1934 ntBASIC18.87■□□□□ 0.61
SIX4Q9UIU6 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX4Q9UIU6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 IGHV3-52-201ENST00000519770 353 ntBASIC18.86■□□□□ 0.61
SIX4Q9UIU6 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX4Q9UIU6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX4Q9UIU6 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms