Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 PAUPAR-201ENST00000630360 2965 ntBASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
VCX3AQ9NNX9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 AC005181.1-201ENST00000604782 1256 ntBASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCX3AQ9NNX9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 KRT18P11-201ENST00000435214 1283 ntBASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 AL031432.3-201ENST00000607698 485 ntBASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 KRT17P1-201ENST00000399211 1546 ntBASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCX3AQ9NNX9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 AC010980.2-201ENST00000587099 1412 ntBASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 HTR7P1-201ENST00000538670 1336 ntBASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.53■□□□□ 0.24
VCX3AQ9NNX9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms