Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MTDHP4-201ENST00000600287 670 ntBASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 AC008735.5-201ENST00000623544 497 ntBASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 GMCL1P1-201ENST00000463439 1581 ntBASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.69■□□□□ 0.42
TM9SF3Q9HD45 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 MED15P5-201ENST00000423150 992 ntBASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC007967.3-201ENST00000434308 558 ntBASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC034105.1-201ENST00000563488 319 ntBASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC140113.2-201ENST00000604370 208 ntBASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 FAM197Y3-203ENST00000618346 717 ntBASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AP000867.4-201ENST00000641616 219 ntBASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TM9SF3Q9HD45 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 RNA5SP415-201ENST00000517246 115 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 AL356488.2-201ENST00000602755 427 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 Z83851.2-201ENST00000609564 659 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 AC107918.4-202ENST00000641623 219 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 AC132938.6-201ENST00000623828 1655 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 AP000997.3-201ENST00000623333 2250 ntBASIC17.67■□□□□ 0.42
TM9SF3Q9HD45 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.66■□□□□ 0.42
TM9SF3Q9HD45 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms