Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 BX842568.4-201ENST00000421222 227 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 KRT18P3-201ENST00000451602 1288 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 SIGLEC30P-201ENST00000455569 941 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 STK19B-204ENST00000512515 211 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 AC136632.2-201ENST00000512891 861 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 MIR1199-201ENST00000621445 119 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 REXO1L11P-201ENST00000620964 1927 ntBASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PAAF1Q9BRP4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 AC005593.1-201ENST00000624894 515 ntBASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PAAF1Q9BRP4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 AC009336.1-201ENST00000608941 1553 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms