Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
VPS35Q96QK1 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
VPS35Q96QK1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.58■□□□□ 0.41
VPS35Q96QK1 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS35Q96QK1 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.58■□□□□ 0.41
VPS35Q96QK1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.58■□□□□ 0.41
VPS35Q96QK1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 DUSP5P1-201ENST00000441325 1139 ntBASIC17.58■□□□□ 0.4
VPS35Q96QK1 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 AC012313.10-201ENST00000623509 926 ntBASIC17.58■□□□□ 0.4
VPS35Q96QK1 AC008764.6-201ENST00000595909 2069 ntBASIC17.58■□□□□ 0.4
VPS35Q96QK1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 PKD1P1-201ENST00000458669 6805 ntBASIC17.58■□□□□ 0.4
VPS35Q96QK1 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
VPS35Q96QK1 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS35Q96QK1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 RCN1P2-201ENST00000398357 915 ntBASIC17.57■□□□□ 0.4
VPS35Q96QK1 NUS1P2-201ENST00000417358 873 ntBASIC17.57■□□□□ 0.4
VPS35Q96QK1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 KRT18P31-201ENST00000506277 1292 ntBASIC17.57■□□□□ 0.4
VPS35Q96QK1 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.57■□□□□ 0.4
VPS35Q96QK1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS35Q96QK1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 AC006116.8-202ENST00000587620 1550 ntBASIC17.57■□□□□ 0.4
VPS35Q96QK1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS35Q96QK1 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 MIR5100-201ENST00000579544 119 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms