Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AC100803.2-201ENST00000562459 1963 ntBASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 YBX2P1-201ENST00000394192 760 ntBASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AC034105.1-201ENST00000563488 319 ntBASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AC004817.3-201ENST00000602957 2129 ntBASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 LINC02084-201ENST00000606069 1096 ntBASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 AC008735.5-201ENST00000623544 497 ntBASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HDDC3Q8N4P3 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 RNA5SP415-201ENST00000517246 115 ntBASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 AC105339.3-201ENST00000560043 636 ntBASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 AC090164.3-201ENST00000610780 2143 ntBASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
HDDC3Q8N4P3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 AC112482.1-201ENST00000492080 688 ntBASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.71■□□□□ 0.43
HDDC3Q8N4P3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
HDDC3Q8N4P3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
HDDC3Q8N4P3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HDDC3Q8N4P3 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.71■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms