Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 AL162412.1-201ENST00000567129 965 ntBASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 MDK-213ENST00000617138 635 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 AC007322.4-201ENST00000509611 723 ntBASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 AC011767.1-201ENST00000617410 1153 ntBASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 AL137784.3-201ENST00000623858 2288 ntBASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28AQ8IWP9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 MIR935-201ENST00000401179 91 ntBASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 AC069236.1-201ENST00000604339 616 ntBASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 AC231657.2-201ENST00000624556 255 ntBASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms