Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 HLA-F-220ENST00000434407 884 ntBASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 TMEM191A-211ENST00000637163 1067 ntBASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 KRT18P22-201ENST00000402024 1347 ntBASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LRIF1Q5T3J3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 TSPY12P-201ENST00000421279 868 ntBASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.68■□□□□ 0.26
LRIF1Q5T3J3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 AL118508.1-201ENST00000613502 2345 ntBASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 KRT18P48-201ENST00000434763 852 ntBASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LRIF1Q5T3J3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms