Protein–RNA interactions for Protein: P63208

SKP1, S-phase kinase-associated protein 1, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1P63208 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SKP1P63208 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.82■□□□□ 0.28
SKP1P63208 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 NFIC-211ENST00000641145 8399 ntBASIC16.82■□□□□ 0.28
SKP1P63208 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.82■□□□□ 0.28
SKP1P63208 NUS1P2-201ENST00000417358 873 ntBASIC16.82■□□□□ 0.28
SKP1P63208 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.82■□□□□ 0.28
SKP1P63208 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.82■□□□□ 0.28
SKP1P63208 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 BNIP3P18-201ENST00000593976 575 ntBASIC16.82■□□□□ 0.28
SKP1P63208 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SKP1P63208 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.82■□□□□ 0.28
SKP1P63208 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.82■□□□□ 0.28
SKP1P63208 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
SKP1P63208 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKP1P63208 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SKP1P63208 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SKP1P63208 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.81■□□□□ 0.28
SKP1P63208 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 COX5BP2-201ENST00000392354 334 ntBASIC16.81■□□□□ 0.28
SKP1P63208 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 AC007967.3-201ENST00000434308 558 ntBASIC16.81■□□□□ 0.28
SKP1P63208 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.81■□□□□ 0.28
SKP1P63208 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.81■□□□□ 0.28
SKP1P63208 AC091304.2-201ENST00000564639 760 ntBASIC16.81■□□□□ 0.28
SKP1P63208 AL691432.3-201ENST00000621860 400 ntBASIC16.81■□□□□ 0.28
SKP1P63208 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SKP1P63208 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.81■□□□□ 0.28
SKP1P63208 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SKP1P63208 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SKP1P63208 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKP1P63208 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.8■□□□□ 0.28
SKP1P63208 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.8■□□□□ 0.28
SKP1P63208 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SKP1P63208 AC100803.2-201ENST00000562459 1963 ntBASIC16.8■□□□□ 0.28
SKP1P63208 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SKP1P63208 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SKP1P63208 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SKP1P63208 AC009949.1-201ENST00000623048 1830 ntBASIC16.8■□□□□ 0.28
SKP1P63208 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SKP1P63208 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms