Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPL39P62891 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RPL39P62891 AC096733.2-201ENST00000609937 1394 ntBASIC12.55□□□□□ -0.4
RPL39P62891 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPL39P62891 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 FLJ38576-201ENST00000623820 2459 ntBASIC12.54□□□□□ -0.4
RPL39P62891 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 DOC2GP-204ENST00000639052 2548 ntBASIC12.54□□□□□ -0.4
RPL39P62891 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 FSCN1P1-201ENST00000568912 1481 ntBASIC12.54□□□□□ -0.4
RPL39P62891 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 MESTP1-201ENST00000404287 994 ntBASIC12.54□□□□□ -0.4
RPL39P62891 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
RPL39P62891 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 MMAB-206ENST00000540016 945 ntTSL 3 BASIC12.54□□□□□ -0.4
RPL39P62891 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 KLF13-207ENST00000560473 489 ntTSL 3 BASIC12.54□□□□□ -0.4
RPL39P62891 AC009065.1-201ENST00000564055 1225 ntBASIC12.54□□□□□ -0.4
RPL39P62891 SLC25A1P4-201ENST00000567977 778 ntBASIC12.54□□□□□ -0.4
RPL39P62891 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
RPL39P62891 AC073195.1-201ENST00000607241 877 ntBASIC12.54□□□□□ -0.4
RPL39P62891 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC12.54□□□□□ -0.4
RPL39P62891 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
RPL39P62891 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
RPL39P62891 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPL39P62891 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.53□□□□□ -0.4
RPL39P62891 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RPL39P62891 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC12.53□□□□□ -0.4
RPL39P62891 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RPL39P62891 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.53□□□□□ -0.4
RPL39P62891 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 REXO1L11P-201ENST00000620964 1927 ntBASIC12.53□□□□□ -0.4
RPL39P62891 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC12.53□□□□□ -0.4
RPL39P62891 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
RPL39P62891 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC12.53□□□□□ -0.4
RPL39P62891 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC12.53□□□□□ -0.4
RPL39P62891 RN7SL471P-201ENST00000580476 299 ntBASIC12.53□□□□□ -0.4
RPL39P62891 AF186192.3-201ENST00000583427 947 ntBASIC12.53□□□□□ -0.4
RPL39P62891 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RPL39P62891 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
RPL39P62891 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RPL39P62891 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC12.53□□□□□ -0.4
RPL39P62891 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPL39P62891 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RPL39P62891 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RPL39P62891 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
RPL39P62891 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms