Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 LINC00304-203ENST00000565008 1864 ntBASIC25.11■■□□□ 1.61
CLTCL1P53675 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CLTCL1P53675 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC25.11■■□□□ 1.61
CLTCL1P53675 GOLGA6L17P-202ENST00000614358 1398 ntBASIC25.11■■□□□ 1.61
CLTCL1P53675 STOM-202ENST00000347359 870 ntTSL 2 BASIC25.11■■□□□ 1.61
CLTCL1P53675 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC25.11■■□□□ 1.61
CLTCL1P53675 PAWRP1-201ENST00000451083 565 ntBASIC25.11■■□□□ 1.61
CLTCL1P53675 AP000344.2-201ENST00000512987 629 ntBASIC25.11■■□□□ 1.61
CLTCL1P53675 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC25.11■■□□□ 1.61
CLTCL1P53675 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC25.11■■□□□ 1.61
CLTCL1P53675 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLTCL1P53675 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC25.11■■□□□ 1.61
CLTCL1P53675 AC046185.3-201ENST00000623228 1824 ntBASIC25.11■■□□□ 1.61
CLTCL1P53675 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CLTCL1P53675 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CLTCL1P53675 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC25.1■■□□□ 1.61
CLTCL1P53675 SLC25A6P2-201ENST00000497974 877 ntBASIC25.1■■□□□ 1.61
CLTCL1P53675 RPL28-205ENST00000558131 444 ntTSL 5 BASIC25.1■■□□□ 1.61
CLTCL1P53675 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
CLTCL1P53675 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC25.1■■□□□ 1.61
CLTCL1P53675 ACTL9-202ENST00000612068 1252 ntBASIC25.1■■□□□ 1.61
CLTCL1P53675 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC25.1■■□□□ 1.61
CLTCL1P53675 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
CLTCL1P53675 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CLTCL1P53675 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC25.1■■□□□ 1.61
CLTCL1P53675 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CLTCL1P53675 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CLTCL1P53675 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC25.09■■□□□ 1.61
CLTCL1P53675 FAM58CP-201ENST00000435741 640 ntBASIC25.09■■□□□ 1.61
CLTCL1P53675 CYMP-203ENST00000474680 1263 ntBASIC25.09■■□□□ 1.61
CLTCL1P53675 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CLTCL1P53675 AC092902.6-201ENST00000641783 218 ntBASIC25.09■■□□□ 1.61
CLTCL1P53675 AC079781.4-201ENST00000641908 219 ntBASIC25.09■■□□□ 1.61
CLTCL1P53675 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CLTCL1P53675 AC138028.4-201ENST00000564984 1845 ntBASIC25.09■■□□□ 1.61
CLTCL1P53675 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CLTCL1P53675 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC25.09■■□□□ 1.61
CLTCL1P53675 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC25.09■■□□□ 1.61
CLTCL1P53675 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC25.09■■□□□ 1.61
CLTCL1P53675 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CLTCL1P53675 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC25.09■■□□□ 1.61
CLTCL1P53675 AC092919.2-201ENST00000623631 1645 ntBASIC25.09■■□□□ 1.61
CLTCL1P53675 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC25.09■■□□□ 1.61
CLTCL1P53675 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CLTCL1P53675 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC25.08■■□□□ 1.61
CLTCL1P53675 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC25.08■■□□□ 1.61
CLTCL1P53675 AC107918.2-201ENST00000530817 355 ntBASIC25.08■■□□□ 1.61
CLTCL1P53675 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
CLTCL1P53675 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC25.08■■□□□ 1.61
CLTCL1P53675 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC25.08■■□□□ 1.61
CLTCL1P53675 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC25.08■■□□□ 1.61
CLTCL1P53675 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC25.08■■□□□ 1.61
CLTCL1P53675 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC25.08■■□□□ 1.61
CLTCL1P53675 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLTCL1P53675 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CLTCL1P53675 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.6
CLTCL1P53675 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC25.08■■□□□ 1.6
CLTCL1P53675 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CLTCL1P53675 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC25.08■■□□□ 1.6
CLTCL1P53675 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.6
CLTCL1P53675 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CLTCL1P53675 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC25.07■■□□□ 1.6
CLTCL1P53675 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
CLTCL1P53675 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 DDT-204ENST00000404092 805 ntTSL 3 BASIC25.07■■□□□ 1.6
CLTCL1P53675 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC25.07■■□□□ 1.6
CLTCL1P53675 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC25.07■■□□□ 1.6
CLTCL1P53675 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CLTCL1P53675 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC25.07■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms