Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AKR1B10P2-201ENST00000577332 927 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 MIR6805-201ENST00000615055 62 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 AC009093.7-201ENST00000623853 1223 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.1■□□□□ 0.49
COL9A1P20849 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 AL022326.1-202ENST00000641533 845 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
COL9A1P20849 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL9A1P20849 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.09■□□□□ 0.49
COL9A1P20849 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.09■□□□□ 0.49
COL9A1P20849 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.09■□□□□ 0.49
COL9A1P20849 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.09■□□□□ 0.49
COL9A1P20849 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.09■□□□□ 0.49
COL9A1P20849 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.09■□□□□ 0.49
COL9A1P20849 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.09■□□□□ 0.49
COL9A1P20849 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.09■□□□□ 0.49
COL9A1P20849 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
COL9A1P20849 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL9A1P20849 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL9A1P20849 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL9A1P20849 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
COL9A1P20849 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.08■□□□□ 0.49
COL9A1P20849 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.08■□□□□ 0.49
COL9A1P20849 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.08■□□□□ 0.49
COL9A1P20849 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL9A1P20849 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL9A1P20849 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.08■□□□□ 0.49
COL9A1P20849 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL9A1P20849 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL9A1P20849 KLF2P3-201ENST00000451977 1087 ntBASIC18.08■□□□□ 0.48
COL9A1P20849 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.08■□□□□ 0.48
COL9A1P20849 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.08■□□□□ 0.48
COL9A1P20849 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 SERBP1P5-201ENST00000510079 1181 ntBASIC18.08■□□□□ 0.48
COL9A1P20849 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.08■□□□□ 0.48
COL9A1P20849 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL9A1P20849 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.08■□□□□ 0.48
COL9A1P20849 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL9A1P20849 MIR6727-201ENST00000620702 65 ntBASIC18.08■□□□□ 0.48
COL9A1P20849 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL9A1P20849 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.08■□□□□ 0.48
COL9A1P20849 AL121761.2-201ENST00000598007 1648 ntBASIC18.08■□□□□ 0.48
COL9A1P20849 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL9A1P20849 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.07■□□□□ 0.48
COL9A1P20849 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 FO538757.1-201ENST00000623083 1397 ntBASIC18.07■□□□□ 0.48
COL9A1P20849 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.07■□□□□ 0.48
COL9A1P20849 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.07■□□□□ 0.48
COL9A1P20849 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.07■□□□□ 0.48
COL9A1P20849 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.07■□□□□ 0.48
COL9A1P20849 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.07■□□□□ 0.48
COL9A1P20849 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.07■□□□□ 0.48
COL9A1P20849 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.07■□□□□ 0.48
COL9A1P20849 GMCL1P1-201ENST00000463439 1581 ntBASIC18.07■□□□□ 0.48
COL9A1P20849 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
COL9A1P20849 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.07■□□□□ 0.48
COL9A1P20849 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL9A1P20849 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL9A1P20849 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms