Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TSPY5P-201ENST00000426936 936 ntBASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 AC005104.2-201ENST00000427818 678 ntBASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 RNF126P1-202ENST00000569893 925 ntBASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TCRBV7S3A2A0A539 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 SPDYE13P-201ENST00000445314 798 ntBASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 AC112907.2-201ENST00000448639 330 ntBASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 AC005332.3-201ENST00000589904 676 ntBASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 GPR32P1-201ENST00000601788 811 ntBASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.99■□□□□ 0.47
TCRBV7S3A2A0A539 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.98■□□□□ 0.47
TCRBV7S3A2A0A539 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 RNF152P1-201ENST00000397754 604 ntBASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 AL390719.2-201ENST00000606993 987 ntBASIC17.97■□□□□ 0.47
TCRBV7S3A2A0A539 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms