Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 DDX43P3-201ENST00000441064 443 ntBASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 FAAHP1-202ENST00000446499 1238 ntBASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 SAPCD2P3-201ENST00000455031 850 ntBASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SNX9Q9Y5X1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 AC122714.2-201ENST00000502787 707 ntBASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 AF238378.1-201ENST00000526806 358 ntBASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX9Q9Y5X1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 SIRPAP1-201ENST00000448467 1770 ntBASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 BX276092.7-203ENST00000637198 1536 ntBASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 AC079781.3-201ENST00000449110 356 ntBASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 AP001269.4-201ENST00000609611 512 ntBASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SNX9Q9Y5X1 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 ABCD1P5-201ENST00000445663 754 ntBASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SNX9Q9Y5X1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms