Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 AC011467.4-201ENST00000594891 528 ntBASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 AL078644.1-201ENST00000609881 752 ntBASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 AC003669.1-201ENST00000334569 611 ntBASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 DUTP2-201ENST00000519164 463 ntBASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 AC096734.2-201ENST00000562054 433 ntBASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 PDPK2P-202ENST00000562415 1191 ntBASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 AC004790.2-201ENST00000623588 572 ntBASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 AL805961.1-202ENST00000641562 540 ntBASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PCDHGA1Q9Y5H4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
PCDHGA1Q9Y5H4 AC098818.2-201ENST00000564925 2320 ntBASIC16.96■□□□□ 0.3
PCDHGA1Q9Y5H4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
PCDHGA1Q9Y5H4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
PCDHGA1Q9Y5H4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
PCDHGA1Q9Y5H4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
PCDHGA1Q9Y5H4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 MRPL20P1-201ENST00000400819 433 ntBASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PCDHGA1Q9Y5H4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PCDHGA1Q9Y5H4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms