Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL390754.1-201ENST00000619088 582 ntBASIC17.39■□□□□ 0.37
VPS13AQ96RL7 AL358472.5-202ENST00000641448 1267 ntBASIC17.39■□□□□ 0.37
VPS13AQ96RL7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS13AQ96RL7 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 AC097493.3-201ENST00000509725 367 ntBASIC17.38■□□□□ 0.37
VPS13AQ96RL7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 PIN1P1-201ENST00000412108 996 ntBASIC17.38■□□□□ 0.37
VPS13AQ96RL7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 MYLKP1-201ENST00000509077 1580 ntBASIC17.38■□□□□ 0.37
VPS13AQ96RL7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 RPS15P9-201ENST00000494093 319 ntBASIC17.38■□□□□ 0.37
VPS13AQ96RL7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 AL662799.1-202ENST00000614205 422 ntBASIC17.38■□□□□ 0.37
VPS13AQ96RL7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.38■□□□□ 0.37
VPS13AQ96RL7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 TREML5P-201ENST00000421694 576 ntBASIC17.37■□□□□ 0.37
VPS13AQ96RL7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VPS13AQ96RL7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.36■□□□□ 0.37
VPS13AQ96RL7 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 SPTLC1P1-201ENST00000447199 261 ntBASIC17.36■□□□□ 0.37
VPS13AQ96RL7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 AL135744.1-201ENST00000565098 629 ntBASIC17.36■□□□□ 0.37
VPS13AQ96RL7 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 SPTSSB-204ENST00000617024 1292 ntBASIC17.36■□□□□ 0.37
VPS13AQ96RL7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VPS13AQ96RL7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms