Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 LYSMD4-203ENST00000378904 2122 ntBASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 LETM1P2-201ENST00000597330 2178 ntBASIC16.4■□□□□ 0.22
CTHRC1Q96CG8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CTHRC1Q96CG8 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
CTHRC1Q96CG8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CTHRC1Q96CG8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.39■□□□□ 0.22
CTHRC1Q96CG8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 KRT16P4-201ENST00000453883 522 ntBASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 MIR3652-201ENST00000579335 131 ntBASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 MIR5100-201ENST00000579544 119 ntBASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CTHRC1Q96CG8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 IGHV3-52-201ENST00000519770 353 ntBASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CTHRC1Q96CG8 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CTHRC1Q96CG8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CTHRC1Q96CG8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CTHRC1Q96CG8 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CTHRC1Q96CG8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms