Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC116Q8IYX3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC116Q8IYX3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 PCED1CP-201ENST00000419887 785 ntBASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 DDX43P3-201ENST00000441064 443 ntBASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 BX276092.5-203ENST00000456199 560 ntBASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 RN7SL606P-201ENST00000472779 293 ntBASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 AC090616.6-201ENST00000582640 721 ntBASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC116Q8IYX3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 KRT18P35-201ENST00000510488 1269 ntBASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 AL592071.1-201ENST00000611956 408 ntBASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 AC116407.4-201ENST00000623319 1061 ntBASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CCDC116Q8IYX3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC116Q8IYX3 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC116Q8IYX3 REXO1L11P-201ENST00000620964 1927 ntBASIC16.7■□□□□ 0.26
CCDC116Q8IYX3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC116Q8IYX3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC116Q8IYX3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC116Q8IYX3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms