Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RHBDL3P58872 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
RHBDL3P58872 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.86■□□□□ 0.93
RHBDL3P58872 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.86■□□□□ 0.93
RHBDL3P58872 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.86■□□□□ 0.93
RHBDL3P58872 UPF3AP3-201ENST00000420996 769 ntBASIC20.86■□□□□ 0.93
RHBDL3P58872 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.86■□□□□ 0.93
RHBDL3P58872 GPX1P2-201ENST00000429271 606 ntBASIC20.86■□□□□ 0.93
RHBDL3P58872 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.86■□□□□ 0.93
RHBDL3P58872 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.86■□□□□ 0.93
RHBDL3P58872 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 AC097637.2-201ENST00000624096 1997 ntBASIC20.86■□□□□ 0.93
RHBDL3P58872 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDL3P58872 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
RHBDL3P58872 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
RHBDL3P58872 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.85■□□□□ 0.93
RHBDL3P58872 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 AC004832.2-201ENST00000426397 482 ntBASIC20.85■□□□□ 0.93
RHBDL3P58872 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.85■□□□□ 0.93
RHBDL3P58872 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.85■□□□□ 0.93
RHBDL3P58872 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.85■□□□□ 0.93
RHBDL3P58872 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.85■□□□□ 0.93
RHBDL3P58872 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.85■□□□□ 0.93
RHBDL3P58872 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.85■□□□□ 0.93
RHBDL3P58872 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RHBDL3P58872 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDL3P58872 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.85■□□□□ 0.93
RHBDL3P58872 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.84■□□□□ 0.93
RHBDL3P58872 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.84■□□□□ 0.93
RHBDL3P58872 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.84■□□□□ 0.93
RHBDL3P58872 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.84■□□□□ 0.93
RHBDL3P58872 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.84■□□□□ 0.93
RHBDL3P58872 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.84■□□□□ 0.93
RHBDL3P58872 AC023274.1-201ENST00000418278 595 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 LINC00982-205ENST00000420957 435 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 AC112482.1-201ENST00000492080 688 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 AC010327.4-202ENST00000591484 748 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 AL805961.1-202ENST00000641562 540 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RHBDL3P58872 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDL3P58872 ABALON-201ENST00000629058 1903 ntBASIC20.84■□□□□ 0.93
RHBDL3P58872 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.84■□□□□ 0.93
RHBDL3P58872 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDL3P58872 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDL3P58872 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDL3P58872 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.83■□□□□ 0.93
RHBDL3P58872 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDL3P58872 GPR89P-201ENST00000407924 1495 ntBASIC20.83■□□□□ 0.93
RHBDL3P58872 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDL3P58872 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RHBDL3P58872 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDL3P58872 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
RHBDL3P58872 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
RHBDL3P58872 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
RHBDL3P58872 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
RHBDL3P58872 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.83■□□□□ 0.93
RHBDL3P58872 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.83■□□□□ 0.93
RHBDL3P58872 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.83■□□□□ 0.93
RHBDL3P58872 AC004790.2-201ENST00000623588 572 ntBASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms