Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGCS2P54868 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HMGCS2P54868 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGCS2P54868 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGCS2P54868 BX276092.7-203ENST00000637198 1536 ntBASIC20.37■□□□□ 0.85
HMGCS2P54868 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGCS2P54868 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGCS2P54868 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
HMGCS2P54868 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGCS2P54868 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
HMGCS2P54868 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 PTCHD3P3-201ENST00000403073 906 ntBASIC20.36■□□□□ 0.85
HMGCS2P54868 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGCS2P54868 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.36■□□□□ 0.85
HMGCS2P54868 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGCS2P54868 AC010654.1-201ENST00000615722 808 ntBASIC20.36■□□□□ 0.85
HMGCS2P54868 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGCS2P54868 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
HMGCS2P54868 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.36■□□□□ 0.85
HMGCS2P54868 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGCS2P54868 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGCS2P54868 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.35■□□□□ 0.85
HMGCS2P54868 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 AP000974.1-201ENST00000623909 2387 ntBASIC20.35■□□□□ 0.85
HMGCS2P54868 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
HMGCS2P54868 AC009336.1-201ENST00000608941 1553 ntBASIC20.35■□□□□ 0.85
HMGCS2P54868 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HMGCS2P54868 MRPL20P1-201ENST00000400819 433 ntBASIC20.35■□□□□ 0.85
HMGCS2P54868 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 AC254562.1-201ENST00000417586 456 ntBASIC20.35■□□□□ 0.85
HMGCS2P54868 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC20.35■□□□□ 0.85
HMGCS2P54868 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGCS2P54868 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
HMGCS2P54868 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.35■□□□□ 0.85
HMGCS2P54868 IGHV3-52-201ENST00000519770 353 ntBASIC20.35■□□□□ 0.85
HMGCS2P54868 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.35■□□□□ 0.85
HMGCS2P54868 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
HMGCS2P54868 AC010507.1-201ENST00000633895 436 ntBASIC20.35■□□□□ 0.85
HMGCS2P54868 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGCS2P54868 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGCS2P54868 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGCS2P54868 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
HMGCS2P54868 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HMGCS2P54868 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGCS2P54868 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HMGCS2P54868 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HMGCS2P54868 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGCS2P54868 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.34■□□□□ 0.85
HMGCS2P54868 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGCS2P54868 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGCS2P54868 LINC02084-201ENST00000606069 1096 ntBASIC20.34■□□□□ 0.85
HMGCS2P54868 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGCS2P54868 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HMGCS2P54868 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.33■□□□□ 0.85
HMGCS2P54868 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGCS2P54868 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGCS2P54868 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGCS2P54868 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.33■□□□□ 0.85
HMGCS2P54868 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGCS2P54868 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGCS2P54868 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.33■□□□□ 0.85
HMGCS2P54868 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.33■□□□□ 0.85
HMGCS2P54868 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.33■□□□□ 0.85
HMGCS2P54868 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HMGCS2P54868 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGCS2P54868 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms