Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXC4P09017 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC4P09017 KRT18P58-201ENST00000527480 1120 ntBASIC17.24■□□□□ 0.35
HOXC4P09017 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 MIR1199-201ENST00000621445 119 ntBASIC17.24■□□□□ 0.35
HOXC4P09017 AC117500.6-201ENST00000624871 588 ntBASIC17.24■□□□□ 0.35
HOXC4P09017 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC4P09017 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXC4P09017 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.23■□□□□ 0.35
HOXC4P09017 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 AC136632.2-201ENST00000512891 861 ntBASIC17.23■□□□□ 0.35
HOXC4P09017 RNA5SP415-201ENST00000517246 115 ntBASIC17.23■□□□□ 0.35
HOXC4P09017 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXC4P09017 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXC4P09017 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HOXC4P09017 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXC4P09017 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 AP002414.3-201ENST00000589352 1468 ntBASIC17.23■□□□□ 0.35
HOXC4P09017 REXO1L11P-201ENST00000620964 1927 ntBASIC17.23■□□□□ 0.35
HOXC4P09017 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HOXC4P09017 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC4P09017 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC4P09017 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HOXC4P09017 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXC4P09017 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXC4P09017 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXC4P09017 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.22■□□□□ 0.35
HOXC4P09017 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC4P09017 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.22■□□□□ 0.35
HOXC4P09017 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
HOXC4P09017 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 AL139424.1-201ENST00000607572 797 ntBASIC17.22■□□□□ 0.35
HOXC4P09017 Z83851.2-201ENST00000609564 659 ntBASIC17.22■□□□□ 0.35
HOXC4P09017 AC005593.1-201ENST00000624894 515 ntBASIC17.22■□□□□ 0.35
HOXC4P09017 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXC4P09017 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HOXC4P09017 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HOXC4P09017 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC4P09017 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC4P09017 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC4P09017 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms