Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.79■□□□□ 0.28
CLPTM1O96005 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.79■□□□□ 0.28
CLPTM1O96005 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.79■□□□□ 0.28
CLPTM1O96005 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CLPTM1O96005 KRT18P55-202ENST00000578578 1546 ntBASIC16.79■□□□□ 0.28
CLPTM1O96005 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLPTM1O96005 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CLPTM1O96005 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLPTM1O96005 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
CLPTM1O96005 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 TUBB8P6-201ENST00000436895 1288 ntBASIC16.78■□□□□ 0.28
CLPTM1O96005 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 KRT18P16-201ENST00000510337 1294 ntBASIC16.78■□□□□ 0.28
CLPTM1O96005 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.78■□□□□ 0.28
CLPTM1O96005 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 AC026691.1-201ENST00000602502 2017 ntBASIC16.78■□□□□ 0.28
CLPTM1O96005 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CLPTM1O96005 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLPTM1O96005 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLPTM1O96005 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.78■□□□□ 0.28
CLPTM1O96005 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.78■□□□□ 0.28
CLPTM1O96005 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CLPTM1O96005 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.78■□□□□ 0.28
CLPTM1O96005 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CLPTM1O96005 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.78■□□□□ 0.28
CLPTM1O96005 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
CLPTM1O96005 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CLPTM1O96005 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.77■□□□□ 0.28
CLPTM1O96005 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.77■□□□□ 0.28
CLPTM1O96005 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.77■□□□□ 0.28
CLPTM1O96005 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.77■□□□□ 0.28
CLPTM1O96005 RARRES2P10-201ENST00000564312 460 ntBASIC16.77■□□□□ 0.28
CLPTM1O96005 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.77■□□□□ 0.28
CLPTM1O96005 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLPTM1O96005 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CLPTM1O96005 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLPTM1O96005 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms