Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 AC022211.2-201ENST00000585075 2527 ntBASIC20.51■□□□□ 0.87
CTDNEP1O95476 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTDNEP1O95476 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
CTDNEP1O95476 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 IER3-202ENST00000376377 1350 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 TPSP2-201ENST00000561760 610 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 MIR3180-1-201ENST00000580374 94 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 MIR3180-3-201ENST00000584616 94 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 AL445228.2-201ENST00000605589 952 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 AL139327.4-201ENST00000612362 153 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 AL358472.4-201ENST00000633140 710 ntBASIC20.5■□□□□ 0.87
CTDNEP1O95476 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CTDNEP1O95476 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CTDNEP1O95476 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 AC246785.2-201ENST00000432512 513 ntBASIC20.49■□□□□ 0.87
CTDNEP1O95476 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 PCDHA12-202ENST00000613593 2588 ntBASIC20.49■□□□□ 0.87
CTDNEP1O95476 AL049757.1-201ENST00000616842 1596 ntBASIC20.49■□□□□ 0.87
CTDNEP1O95476 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CTDNEP1O95476 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.49■□□□□ 0.87
CTDNEP1O95476 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 AC002558.1-201ENST00000488906 803 ntBASIC20.48■□□□□ 0.87
CTDNEP1O95476 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CTDNEP1O95476 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
CTDNEP1O95476 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 AC233702.3-201ENST00000578656 1387 ntBASIC20.47■□□□□ 0.87
CTDNEP1O95476 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
CTDNEP1O95476 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
CTDNEP1O95476 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms