Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 MIR1233-2-201ENST00000408138 82 ntBASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 MIR1233-1-201ENST00000408722 82 ntBASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 IGHV3-22-201ENST00000520721 359 ntBASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 HLA-J-201ENST00000462773 1622 ntBASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 BX842568.4-201ENST00000421222 227 ntBASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 OR7E14P-202ENST00000530490 1290 ntBASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 AC145285.3-201ENST00000564603 959 ntBASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TM9SF3Q9HD45 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AC104109.2-201ENST00000602919 1418 ntBASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 HCG11-201ENST00000411553 5696 ntBASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AC025062.2-201ENST00000605477 670 ntBASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 AL139288.1-201ENST00000623748 933 ntBASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TM9SF3Q9HD45 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.72■□□□□ 0.43
TM9SF3Q9HD45 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms