Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 KRT8P47-201ENST00000604727 1398 ntBASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD1Q96NR3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 NUS1P2-201ENST00000417358 873 ntBASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AC096582.2-201ENST00000510860 516 ntBASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AC009533.2-201ENST00000543664 586 ntBASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AC091304.2-201ENST00000564639 760 ntBASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 BNIP3P18-201ENST00000593976 575 ntBASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 AC100803.2-201ENST00000562459 1963 ntBASIC16.75■□□□□ 0.27
PTCHD1Q96NR3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 AL450487.1-201ENST00000426799 995 ntBASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 LINC01711-201ENST00000598340 967 ntBASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 AC116407.2-201ENST00000613639 860 ntBASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD1Q96NR3 TP73-AS1-210ENST00000637775 1455 ntBASIC16.73■□□□□ 0.27
PTCHD1Q96NR3 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms