Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.48■□□□□ 0.23
BEST3Q8N1M1 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
BEST3Q8N1M1 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 FAM197Y8-203ENST00000450145 560 ntBASIC16.47■□□□□ 0.23
BEST3Q8N1M1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 AC093010.1-201ENST00000473625 1624 ntBASIC16.47■□□□□ 0.23
BEST3Q8N1M1 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BEST3Q8N1M1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
BEST3Q8N1M1 AP000347.1-202ENST00000435868 847 ntBASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms