Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 REXO1L11P-201ENST00000620964 1927 ntBASIC20.57■□□□□ 0.88
KRT40Q6A162 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
KRT40Q6A162 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT40Q6A162 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT40Q6A162 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT40Q6A162 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT40Q6A162 AL022342.1-201ENST00000400363 863 ntBASIC20.57■□□□□ 0.88
KRT40Q6A162 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT40Q6A162 TSPY22P-201ENST00000427496 604 ntBASIC20.57■□□□□ 0.88
KRT40Q6A162 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.57■□□□□ 0.88
KRT40Q6A162 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.57■□□□□ 0.88
KRT40Q6A162 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT40Q6A162 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT40Q6A162 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.57■□□□□ 0.88
KRT40Q6A162 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT40Q6A162 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
KRT40Q6A162 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT40Q6A162 PP12613-201ENST00000424958 2230 ntBASIC20.57■□□□□ 0.88
KRT40Q6A162 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.57■□□□□ 0.88
KRT40Q6A162 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
KRT40Q6A162 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
KRT40Q6A162 LINC00304-203ENST00000565008 1864 ntBASIC20.56■□□□□ 0.88
KRT40Q6A162 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
KRT40Q6A162 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
KRT40Q6A162 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 DDX43P3-201ENST00000441064 443 ntBASIC20.56■□□□□ 0.88
KRT40Q6A162 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.56■□□□□ 0.88
KRT40Q6A162 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT40Q6A162 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT40Q6A162 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT40Q6A162 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
KRT40Q6A162 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
KRT40Q6A162 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT40Q6A162 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
KRT40Q6A162 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
KRT40Q6A162 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.55■□□□□ 0.88
KRT40Q6A162 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.55■□□□□ 0.88
KRT40Q6A162 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 AC011498.5-201ENST00000592027 486 ntBASIC20.55■□□□□ 0.88
KRT40Q6A162 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.55■□□□□ 0.88
KRT40Q6A162 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.55■□□□□ 0.88
KRT40Q6A162 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.55■□□□□ 0.88
KRT40Q6A162 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
KRT40Q6A162 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
KRT40Q6A162 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
KRT40Q6A162 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT40Q6A162 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.55■□□□□ 0.88
KRT40Q6A162 AC133963.1-201ENST00000504166 1679 ntBASIC20.54■□□□□ 0.88
KRT40Q6A162 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
KRT40Q6A162 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.54■□□□□ 0.88
KRT40Q6A162 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
KRT40Q6A162 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.54■□□□□ 0.88
KRT40Q6A162 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
KRT40Q6A162 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.54■□□□□ 0.88
KRT40Q6A162 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
KRT40Q6A162 MIR3180-1-201ENST00000580374 94 ntBASIC20.54■□□□□ 0.88
KRT40Q6A162 MIR3180-3-201ENST00000584616 94 ntBASIC20.54■□□□□ 0.88
KRT40Q6A162 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
KRT40Q6A162 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.54■□□□□ 0.88
KRT40Q6A162 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.54■□□□□ 0.88
KRT40Q6A162 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT40Q6A162 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms