Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC14.34□□□□□ -0.11
CX3CL1P78423 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CX3CL1P78423 AC083849.1-201ENST00000615227 514 ntBASIC14.34□□□□□ -0.11
CX3CL1P78423 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.34□□□□□ -0.11
CX3CL1P78423 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.34□□□□□ -0.11
CX3CL1P78423 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
CX3CL1P78423 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.34□□□□□ -0.11
CX3CL1P78423 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CX3CL1P78423 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.33□□□□□ -0.11
CX3CL1P78423 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.33□□□□□ -0.11
CX3CL1P78423 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 LINC00167-201ENST00000530583 1419 ntBASIC14.33□□□□□ -0.11
CX3CL1P78423 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
CX3CL1P78423 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CX3CL1P78423 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.33□□□□□ -0.11
CX3CL1P78423 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.33□□□□□ -0.12
CX3CL1P78423 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.33□□□□□ -0.12
CX3CL1P78423 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC14.33□□□□□ -0.12
CX3CL1P78423 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 SPDYE13P-201ENST00000445314 798 ntBASIC14.33□□□□□ -0.12
CX3CL1P78423 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.33□□□□□ -0.12
CX3CL1P78423 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.33□□□□□ -0.12
CX3CL1P78423 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.33□□□□□ -0.12
CX3CL1P78423 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.33□□□□□ -0.12
CX3CL1P78423 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CX3CL1P78423 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.33□□□□□ -0.12
CX3CL1P78423 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.33□□□□□ -0.12
CX3CL1P78423 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CX3CL1P78423 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 AC012317.2-201ENST00000623305 2251 ntBASIC14.32□□□□□ -0.12
CX3CL1P78423 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CX3CL1P78423 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 AC084018.2-201ENST00000613093 2607 ntBASIC14.32□□□□□ -0.12
CX3CL1P78423 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CX3CL1P78423 IGHGP-201ENST00000390555 1178 ntBASIC14.32□□□□□ -0.12
CX3CL1P78423 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.32□□□□□ -0.12
CX3CL1P78423 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.32□□□□□ -0.12
CX3CL1P78423 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.32□□□□□ -0.12
CX3CL1P78423 AL031133.1-201ENST00000406807 723 ntBASIC14.32□□□□□ -0.12
CX3CL1P78423 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms