Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF4P78317 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RNF4P78317 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.44■□□□□ 0.22
RNF4P78317 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RNF4P78317 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.44■□□□□ 0.22
RNF4P78317 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.44■□□□□ 0.22
RNF4P78317 DDX43P3-201ENST00000441064 443 ntBASIC16.44■□□□□ 0.22
RNF4P78317 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.44■□□□□ 0.22
RNF4P78317 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.44■□□□□ 0.22
RNF4P78317 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 RN7SL510P-201ENST00000581311 263 ntBASIC16.44■□□□□ 0.22
RNF4P78317 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.44■□□□□ 0.22
RNF4P78317 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RNF4P78317 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.44■□□□□ 0.22
RNF4P78317 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF4P78317 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.43■□□□□ 0.22
RNF4P78317 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
RNF4P78317 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.43■□□□□ 0.22
RNF4P78317 COX5BP2-201ENST00000392354 334 ntBASIC16.43■□□□□ 0.22
RNF4P78317 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.43■□□□□ 0.22
RNF4P78317 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.43■□□□□ 0.22
RNF4P78317 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.43■□□□□ 0.22
RNF4P78317 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
RNF4P78317 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNF4P78317 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
RNF4P78317 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
RNF4P78317 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
RNF4P78317 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.42■□□□□ 0.22
RNF4P78317 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.42■□□□□ 0.22
RNF4P78317 TPM4P1-201ENST00000436100 807 ntBASIC16.42■□□□□ 0.22
RNF4P78317 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.42■□□□□ 0.22
RNF4P78317 AC132008.2-207ENST00000454517 770 ntBASIC16.42■□□□□ 0.22
RNF4P78317 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.42■□□□□ 0.22
RNF4P78317 AC122714.2-201ENST00000502787 707 ntBASIC16.42■□□□□ 0.22
RNF4P78317 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.42■□□□□ 0.22
RNF4P78317 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.42■□□□□ 0.22
RNF4P78317 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.42■□□□□ 0.22
RNF4P78317 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms