Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA3P55318 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA3P55318 FLJ16779-201ENST00000612722 7638 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 MIR663A-201ENST00000385250 93 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 AC097658.1-201ENST00000475555 843 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA3P55318 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA3P55318 AL445675.2-201ENST00000620291 557 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 AC131212.4-201ENST00000623606 975 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 AC073111.5-205ENST00000641717 521 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 HLA-J-201ENST00000462773 1622 ntBASIC13.37□□□□□ -0.27
FOXA3P55318 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA3P55318 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
FOXA3P55318 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA3P55318 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA3P55318 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA3P55318 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 LINC00304-203ENST00000565008 1864 ntBASIC13.36□□□□□ -0.27
FOXA3P55318 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 RHEB-204ENST00000472642 900 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA3P55318 THEM4-205ENST00000489410 643 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA3P55318 TK2-208ENST00000545043 1120 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA3P55318 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA3P55318 AC080038.1-201ENST00000611274 1154 ntBASIC13.36□□□□□ -0.27
FOXA3P55318 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
FOXA3P55318 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
FOXA3P55318 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA3P55318 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
FOXA3P55318 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms