Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN4P29074 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.87■□□□□ 0.45
PTPN4P29074 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
PTPN4P29074 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PTPN4P29074 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
PTPN4P29074 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.86■□□□□ 0.45
PTPN4P29074 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.86■□□□□ 0.45
PTPN4P29074 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.86■□□□□ 0.45
PTPN4P29074 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 IER3-202ENST00000376377 1350 ntBASIC17.86■□□□□ 0.45
PTPN4P29074 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.86■□□□□ 0.45
PTPN4P29074 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PTPN4P29074 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN4P29074 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN4P29074 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.85■□□□□ 0.45
PTPN4P29074 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
PTPN4P29074 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.85■□□□□ 0.45
PTPN4P29074 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.85■□□□□ 0.45
PTPN4P29074 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.85■□□□□ 0.45
PTPN4P29074 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.85■□□□□ 0.45
PTPN4P29074 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN4P29074 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
PTPN4P29074 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.85■□□□□ 0.45
PTPN4P29074 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.85■□□□□ 0.45
PTPN4P29074 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
PTPN4P29074 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN4P29074 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN4P29074 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.84■□□□□ 0.45
PTPN4P29074 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
PTPN4P29074 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN4P29074 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN4P29074 KRT18P38-201ENST00000449496 1282 ntBASIC17.84■□□□□ 0.45
PTPN4P29074 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.84■□□□□ 0.45
PTPN4P29074 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.84■□□□□ 0.45
PTPN4P29074 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms