Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 AC008677.1-201ENST00000519230 1561 ntBASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC26.7■■□□□ 1.86
COL17A1Q9UMD9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL17A1Q9UMD9 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 COX5BP2-201ENST00000392354 334 ntBASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AC004890.2-204ENST00000481968 304 ntBASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AC243562.1-201ENST00000560672 389 ntBASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 IFT20-216ENST00000588477 774 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 SPDYE14P-201ENST00000442619 822 ntBASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AL592309.1-201ENST00000443127 649 ntBASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 HILS1-202ENST00000545329 423 ntBASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 TSFM-210ENST00000550559 897 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC26.68■■□□□ 1.86
COL17A1Q9UMD9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 FUT8-AS1-201ENST00000621019 1521 ntBASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 SNX12-206ENST00000622259 661 ntTSL 5 BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL17A1Q9UMD9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 CYP51A1P2-201ENST00000419457 1499 ntBASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 FAM185BP-201ENST00000443595 716 ntBASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC26.66■■□□□ 1.86
COL17A1Q9UMD9 AC097493.3-201ENST00000509725 367 ntBASIC26.66■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms