Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.97
SHROOM4Q9ULL8 AL139400.1-201ENST00000366220 510 ntBASIC33.57■■■□□ 2.97
SHROOM4Q9ULL8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.97
SHROOM4Q9ULL8 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC33.57■■■□□ 2.97
SHROOM4Q9ULL8 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC33.57■■■□□ 2.97
SHROOM4Q9ULL8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 AC004817.3-201ENST00000602957 2129 ntBASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
SHROOM4Q9ULL8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 PRYP5-201ENST00000451909 266 ntBASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 CCDC74BP1-201ENST00000508880 1123 ntBASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 COX5A-202ENST00000562233 441 ntTSL 3 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 AC135776.1-201ENST00000319817 2481 ntBASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 TNXA-203ENST00000507684 2038 ntBASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 BX005266.1-201ENST00000473402 457 ntBASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC33.56■■■□□ 2.96
SHROOM4Q9ULL8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 GPR89P-201ENST00000407924 1495 ntBASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC33.55■■■□□ 2.96
SHROOM4Q9ULL8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 AC097374.2-201ENST00000618617 1306 ntBASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
SHROOM4Q9ULL8 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 AC093677.2-201ENST00000600169 1863 ntBASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SHROOM4Q9ULL8 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 AC018445.3-201ENST00000624177 1945 ntBASIC33.52■■■□□ 2.96
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms