Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
MKS1Q9NXB0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 Z99916.2-201ENST00000604037 246 ntBASIC17.55■□□□□ 0.4
MKS1Q9NXB0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MKS1Q9NXB0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 INGX-201ENST00000359239 846 ntBASIC17.54■□□□□ 0.4
MKS1Q9NXB0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 MIR1238-201ENST00000408483 83 ntBASIC17.54■□□□□ 0.4
MKS1Q9NXB0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 MIR4785-201ENST00000585005 73 ntBASIC17.54■□□□□ 0.4
MKS1Q9NXB0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MKS1Q9NXB0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 SLC25A1P3-201ENST00000395415 828 ntBASIC17.53■□□□□ 0.4
MKS1Q9NXB0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 AL139327.4-201ENST00000612362 153 ntBASIC17.53■□□□□ 0.4
MKS1Q9NXB0 AC009154.2-201ENST00000621177 724 ntBASIC17.53■□□□□ 0.4
MKS1Q9NXB0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MKS1Q9NXB0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms