Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 AP002414.1-201ENST00000391405 1147 ntBASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 PTCHD3P3-201ENST00000403073 906 ntBASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 CD63-210ENST00000550776 870 ntTSL 5 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 ACTG1P14-201ENST00000446382 1122 ntBASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 AL353135.1-201ENST00000606729 504 ntBASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTFDC1Q9BY42 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.45■■□□□ 1.03
RTFDC1Q9BY42 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.45■■□□□ 1.02
RTFDC1Q9BY42 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 FAM8A3P-201ENST00000427218 844 ntBASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 AP000344.2-201ENST00000512987 629 ntBASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 AC109462.3-201ENST00000573934 613 ntBASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 GGTLC5P-201ENST00000617623 998 ntBASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 BCAR1-209ENST00000546196 1340 ntBASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTFDC1Q9BY42 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms