Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 SIGLEC16-201ENST00000599858 1437 ntBASIC17.79■□□□□ 0.44
HMGB4Q8WW32 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 PRYP5-201ENST00000451909 266 ntBASIC17.78■□□□□ 0.44
HMGB4Q8WW32 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB4Q8WW32 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 AL020989.1-201ENST00000422979 469 ntBASIC17.77■□□□□ 0.44
HMGB4Q8WW32 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB4Q8WW32 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.77■□□□□ 0.43
HMGB4Q8WW32 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 COX5BP2-201ENST00000392354 334 ntBASIC17.76■□□□□ 0.43
HMGB4Q8WW32 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.76■□□□□ 0.43
HMGB4Q8WW32 PMS2P2-201ENST00000425039 1128 ntBASIC17.76■□□□□ 0.43
HMGB4Q8WW32 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms