Protein–RNA interactions for Protein: Q8TEJ3

SH3RF3, SH3 domain-containing RING finger protein 3, humanhuman

Predicted RBP Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF3Q8TEJ3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 AL020989.1-201ENST00000422979 469 ntBASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 FLJ13224-201ENST00000313737 1514 ntBASIC21.04■□□□□ 0.96
SH3RF3Q8TEJ3 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 KRT18P27-201ENST00000427733 1299 ntBASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 KRT18P55-202ENST00000578578 1546 ntBASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SH3RF3Q8TEJ3 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 KLF4P1-201ENST00000412782 1185 ntBASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 UNC93B6-202ENST00000528242 690 ntBASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 Z83851.2-201ENST00000609564 659 ntBASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF3Q8TEJ3 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SH3RF3Q8TEJ3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SH3RF3Q8TEJ3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SH3RF3Q8TEJ3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.02■□□□□ 0.95
SH3RF3Q8TEJ3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SH3RF3Q8TEJ3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.02■□□□□ 0.95
SH3RF3Q8TEJ3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 AC073621.1-201ENST00000392730 636 ntBASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 TERC-201ENST00000602385 541 ntBASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 AL356488.2-201ENST00000602755 427 ntBASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.01■□□□□ 0.95
SH3RF3Q8TEJ3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 AC138028.4-201ENST00000564984 1845 ntBASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 BICD1-207ENST00000551848 1962 ntBASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC21■□□□□ 0.95
SH3RF3Q8TEJ3 LBH-204ENST00000406087 559 ntTSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms