Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 AC006058.4-201ENST00000624016 1670 ntBASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 AC124283.5-201ENST00000624661 1809 ntBASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLRN3Q8NCR9 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 SNX18-202ENST00000343017 3140 ntBASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 AL354811.1-201ENST00000610286 706 ntBASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 AL122018.1-201ENST00000446607 2310 ntBASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 AC079328.2-201ENST00000561241 3354 ntBASIC14.19□□□□□ -0.14
CLRN3Q8NCR9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 NORAD-201ENST00000565493 5339 ntBASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 AC023632.3-201ENST00000521633 145 ntBASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms