Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 AC140113.2-201ENST00000604370 208 ntBASIC18.87■□□□□ 0.61
USP41Q3LFD5 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 AL096828.2-201ENST00000567259 1965 ntBASIC18.86■□□□□ 0.61
USP41Q3LFD5 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 SPDYE21P-201ENST00000413323 827 ntBASIC18.86■□□□□ 0.61
USP41Q3LFD5 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 PGAM5P1-201ENST00000518923 814 ntBASIC18.86■□□□□ 0.61
USP41Q3LFD5 UNC93B6-202ENST00000528242 690 ntBASIC18.86■□□□□ 0.61
USP41Q3LFD5 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 AC073592.5-201ENST00000624854 528 ntBASIC18.86■□□□□ 0.61
USP41Q3LFD5 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP41Q3LFD5 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
USP41Q3LFD5 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 MIR1233-2-201ENST00000408138 82 ntBASIC18.85■□□□□ 0.61
USP41Q3LFD5 MIR1233-1-201ENST00000408722 82 ntBASIC18.85■□□□□ 0.61
USP41Q3LFD5 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 AC006557.2-201ENST00000592985 1240 ntBASIC18.85■□□□□ 0.61
USP41Q3LFD5 AL356488.2-201ENST00000602755 427 ntBASIC18.85■□□□□ 0.61
USP41Q3LFD5 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP41Q3LFD5 AC004817.3-201ENST00000602957 2129 ntBASIC18.85■□□□□ 0.61
USP41Q3LFD5 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.85■□□□□ 0.61
USP41Q3LFD5 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 MIR1199-201ENST00000621445 119 ntBASIC18.84■□□□□ 0.61
USP41Q3LFD5 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP41Q3LFD5 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms