Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CENPFP49454 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.91■□□□□ 0.78
CENPFP49454 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CENPFP49454 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CENPFP49454 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CENPFP49454 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CENPFP49454 AC099522.2-201ENST00000607001 744 ntBASIC19.91■□□□□ 0.78
CENPFP49454 AC008667.4-201ENST00000607370 168 ntBASIC19.91■□□□□ 0.78
CENPFP49454 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CENPFP49454 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CENPFP49454 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CENPFP49454 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CENPFP49454 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.91■□□□□ 0.78
CENPFP49454 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.91■□□□□ 0.78
CENPFP49454 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CENPFP49454 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CENPFP49454 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.91■□□□□ 0.78
CENPFP49454 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC19.91■□□□□ 0.78
CENPFP49454 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.91■□□□□ 0.78
CENPFP49454 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.9■□□□□ 0.78
CENPFP49454 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 AC008677.1-201ENST00000519230 1561 ntBASIC19.9■□□□□ 0.78
CENPFP49454 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.9■□□□□ 0.78
CENPFP49454 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.9■□□□□ 0.78
CENPFP49454 AC096734.2-201ENST00000562054 433 ntBASIC19.9■□□□□ 0.78
CENPFP49454 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 AC018445.3-201ENST00000624177 1945 ntBASIC19.9■□□□□ 0.78
CENPFP49454 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.9■□□□□ 0.78
CENPFP49454 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.9■□□□□ 0.78
CENPFP49454 MRPS18AP1-201ENST00000414458 589 ntBASIC19.9■□□□□ 0.78
CENPFP49454 FAM58CP-201ENST00000435741 640 ntBASIC19.9■□□□□ 0.78
CENPFP49454 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.9■□□□□ 0.78
CENPFP49454 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.9■□□□□ 0.78
CENPFP49454 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CENPFP49454 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CENPFP49454 TFAMP1-201ENST00000412727 736 ntBASIC19.89■□□□□ 0.78
CENPFP49454 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
CENPFP49454 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.89■□□□□ 0.78
CENPFP49454 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.89■□□□□ 0.78
CENPFP49454 COQ9-214ENST00000567933 882 ntTSL 3 BASIC19.89■□□□□ 0.78
CENPFP49454 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.89■□□□□ 0.78
CENPFP49454 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.89■□□□□ 0.78
CENPFP49454 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CENPFP49454 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC19.89■□□□□ 0.77
CENPFP49454 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.89■□□□□ 0.77
CENPFP49454 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.89■□□□□ 0.77
CENPFP49454 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.89■□□□□ 0.77
CENPFP49454 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.89■□□□□ 0.77
CENPFP49454 AC126763.1-201ENST00000552015 2118 ntBASIC19.89■□□□□ 0.77
CENPFP49454 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.89■□□□□ 0.77
CENPFP49454 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.89■□□□□ 0.77
CENPFP49454 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 GNAS-203ENST00000306120 1878 ntBASIC19.89■□□□□ 0.77
CENPFP49454 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
CENPFP49454 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.89■□□□□ 0.77
CENPFP49454 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.89■□□□□ 0.77
CENPFP49454 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.89■□□□□ 0.77
CENPFP49454 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CENPFP49454 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.89■□□□□ 0.77
CENPFP49454 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CENPFP49454 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CENPFP49454 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CENPFP49454 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CENPFP49454 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CENPFP49454 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
CENPFP49454 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CENPFP49454 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CENPFP49454 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.88■□□□□ 0.77
CENPFP49454 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms