Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.62■□□□□ 0.41
CXCL12P48061 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CXCL12P48061 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 AC097637.2-201ENST00000624096 1997 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 AC004461.1-201ENST00000412461 403 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.61■□□□□ 0.41
CXCL12P48061 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 HLA-J-203ENST00000494367 1087 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 STK19B-204ENST00000512515 211 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.61■□□□□ 0.41
CXCL12P48061 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.61■□□□□ 0.41
CXCL12P48061 AC109462.3-201ENST00000573934 613 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 OR7E47P-204ENST00000575924 449 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.61■□□□□ 0.41
CXCL12P48061 AC105339.1-204ENST00000636249 355 ntBASIC17.61■□□□□ 0.41
CXCL12P48061 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.61■□□□□ 0.41
CXCL12P48061 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.61■□□□□ 0.41
CXCL12P48061 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CXCL12P48061 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.61■□□□□ 0.41
CXCL12P48061 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
CXCL12P48061 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.61■□□□□ 0.41
CXCL12P48061 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CXCL12P48061 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CXCL12P48061 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CXCL12P48061 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CXCL12P48061 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.6■□□□□ 0.41
CXCL12P48061 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.6■□□□□ 0.41
CXCL12P48061 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.6■□□□□ 0.41
CXCL12P48061 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 AC092902.6-201ENST00000641783 218 ntBASIC17.6■□□□□ 0.41
CXCL12P48061 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.6■□□□□ 0.41
CXCL12P48061 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CXCL12P48061 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
CXCL12P48061 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.6■□□□□ 0.41
CXCL12P48061 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.6■□□□□ 0.41
CXCL12P48061 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CXCL12P48061 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CXCL12P48061 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 PHGDH-209ENST00000641074 1780 ntBASIC17.59■□□□□ 0.41
CXCL12P48061 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.59■□□□□ 0.41
CXCL12P48061 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.59■□□□□ 0.41
CXCL12P48061 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.59■□□□□ 0.41
CXCL12P48061 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.59■□□□□ 0.41
CXCL12P48061 DDX43P3-201ENST00000441064 443 ntBASIC17.59■□□□□ 0.41
CXCL12P48061 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.59■□□□□ 0.41
CXCL12P48061 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.59■□□□□ 0.41
CXCL12P48061 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.59■□□□□ 0.41
CXCL12P48061 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.59■□□□□ 0.41
CXCL12P48061 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.59■□□□□ 0.41
CXCL12P48061 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.59■□□□□ 0.41
CXCL12P48061 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CXCL12P48061 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.59■□□□□ 0.41
CXCL12P48061 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CXCL12P48061 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CXCL12P48061 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.59■□□□□ 0.41
CXCL12P48061 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.41
CXCL12P48061 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CXCL12P48061 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.58■□□□□ 0.41
CXCL12P48061 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms