Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.74■□□□□ 0.59
RTN3O95197 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.74■□□□□ 0.59
RTN3O95197 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.74■□□□□ 0.59
RTN3O95197 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.74■□□□□ 0.59
RTN3O95197 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
RTN3O95197 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
RTN3O95197 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.73■□□□□ 0.59
RTN3O95197 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.73■□□□□ 0.59
RTN3O95197 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
RTN3O95197 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.73■□□□□ 0.59
RTN3O95197 KRT8P47-201ENST00000604727 1398 ntBASIC18.73■□□□□ 0.59
RTN3O95197 AL356309.3-201ENST00000624132 1934 ntBASIC18.73■□□□□ 0.59
RTN3O95197 AKR1C7P-201ENST00000305623 895 ntBASIC18.73■□□□□ 0.59
RTN3O95197 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
RTN3O95197 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.73■□□□□ 0.59
RTN3O95197 FAM220CP-201ENST00000395253 831 ntBASIC18.73■□□□□ 0.59
RTN3O95197 AC132008.2-207ENST00000454517 770 ntBASIC18.73■□□□□ 0.59
RTN3O95197 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.73■□□□□ 0.59
RTN3O95197 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.73■□□□□ 0.59
RTN3O95197 AL121912.1-201ENST00000603683 238 ntBASIC18.73■□□□□ 0.59
RTN3O95197 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.73■□□□□ 0.59
RTN3O95197 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.73■□□□□ 0.59
RTN3O95197 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
RTN3O95197 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RTN3O95197 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RTN3O95197 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.73■□□□□ 0.59
RTN3O95197 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RTN3O95197 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.72■□□□□ 0.59
RTN3O95197 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RTN3O95197 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.72■□□□□ 0.59
RTN3O95197 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.72■□□□□ 0.59
RTN3O95197 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 AL031008.1-201ENST00000619963 541 ntBASIC18.72■□□□□ 0.59
RTN3O95197 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.72■□□□□ 0.59
RTN3O95197 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.72■□□□□ 0.59
RTN3O95197 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RTN3O95197 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
RTN3O95197 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
RTN3O95197 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 AC007967.3-201ENST00000434308 558 ntBASIC18.71■□□□□ 0.59
RTN3O95197 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.71■□□□□ 0.59
RTN3O95197 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.71■□□□□ 0.59
RTN3O95197 AC116407.2-201ENST00000613639 860 ntBASIC18.71■□□□□ 0.59
RTN3O95197 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
RTN3O95197 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms