Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.82■□□□□ 0.44
SHOX2O60902 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHOX2O60902 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SHOX2O60902 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.81■□□□□ 0.44
SHOX2O60902 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.81■□□□□ 0.44
SHOX2O60902 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.81■□□□□ 0.44
SHOX2O60902 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.81■□□□□ 0.44
SHOX2O60902 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.81■□□□□ 0.44
SHOX2O60902 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.81■□□□□ 0.44
SHOX2O60902 LINC02012-201ENST00000608206 1725 ntBASIC17.81■□□□□ 0.44
SHOX2O60902 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.81■□□□□ 0.44
SHOX2O60902 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SHOX2O60902 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHOX2O60902 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.8■□□□□ 0.44
SHOX2O60902 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SHOX2O60902 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.8■□□□□ 0.44
SHOX2O60902 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SHOX2O60902 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SHOX2O60902 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
SHOX2O60902 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.8■□□□□ 0.44
SHOX2O60902 AC006970.2-201ENST00000450065 779 ntBASIC17.8■□□□□ 0.44
SHOX2O60902 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.8■□□□□ 0.44
SHOX2O60902 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SHOX2O60902 AC120498.8-201ENST00000614275 531 ntBASIC17.8■□□□□ 0.44
SHOX2O60902 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SHOX2O60902 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHOX2O60902 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
SHOX2O60902 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SHOX2O60902 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
SHOX2O60902 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SHOX2O60902 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHOX2O60902 AC092368.3-202ENST00000574180 1591 ntBASIC17.79■□□□□ 0.44
SHOX2O60902 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHOX2O60902 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.79■□□□□ 0.44
SHOX2O60902 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.79■□□□□ 0.44
SHOX2O60902 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.79■□□□□ 0.44
SHOX2O60902 OR6D1P-202ENST00000641007 5290 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms