Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXA3O43365 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HOXA3O43365 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
HOXA3O43365 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXA3O43365 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
HOXA3O43365 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HOXA3O43365 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
HOXA3O43365 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA3O43365 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXA3O43365 AC007967.3-201ENST00000434308 558 ntBASIC14.29□□□□□ -0.12
HOXA3O43365 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.29□□□□□ -0.12
HOXA3O43365 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 OR7E14P-202ENST00000530490 1290 ntBASIC14.29□□□□□ -0.12
HOXA3O43365 AC092865.5-201ENST00000545435 363 ntBASIC14.29□□□□□ -0.12
HOXA3O43365 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA3O43365 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.29□□□□□ -0.12
HOXA3O43365 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA3O43365 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA3O43365 AL139288.1-201ENST00000623748 933 ntBASIC14.29□□□□□ -0.12
HOXA3O43365 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HOXA3O43365 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA3O43365 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA3O43365 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HOXA3O43365 HLA-J-201ENST00000462773 1622 ntBASIC14.29□□□□□ -0.12
HOXA3O43365 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA3O43365 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA3O43365 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HOXA3O43365 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA3O43365 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 AC092910.1-201ENST00000482027 1129 ntBASIC14.28□□□□□ -0.12
HOXA3O43365 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 PMS2P7-201ENST00000506558 1336 ntBASIC14.28□□□□□ -0.12
HOXA3O43365 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA3O43365 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA3O43365 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.28□□□□□ -0.12
HOXA3O43365 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 AL031598.1-201ENST00000561511 1773 ntBASIC14.28□□□□□ -0.12
HOXA3O43365 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA3O43365 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA3O43365 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA3O43365 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA3O43365 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXA3O43365 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA3O43365 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms