Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.6■■□□□ 1.53
TM9SF3Q9HD45 MIR3960-201ENST00000583311 91 ntBASIC24.6■■□□□ 1.53
TM9SF3Q9HD45 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
TM9SF3Q9HD45 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
TM9SF3Q9HD45 SPCS2P3-201ENST00000500401 656 ntBASIC24.58■■□□□ 1.53
TM9SF3Q9HD45 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
TM9SF3Q9HD45 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 BHLHE23-202ENST00000612929 1109 ntBASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
TM9SF3Q9HD45 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
TM9SF3Q9HD45 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
TM9SF3Q9HD45 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.56■■□□□ 1.52
TM9SF3Q9HD45 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.56■■□□□ 1.52
TM9SF3Q9HD45 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
TM9SF3Q9HD45 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
TM9SF3Q9HD45 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.55■■□□□ 1.52
TM9SF3Q9HD45 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
TM9SF3Q9HD45 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TM9SF3Q9HD45 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
TM9SF3Q9HD45 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TM9SF3Q9HD45 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC24.55■■□□□ 1.52
TM9SF3Q9HD45 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
TM9SF3Q9HD45 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TM9SF3Q9HD45 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TM9SF3Q9HD45 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.54■■□□□ 1.52
TM9SF3Q9HD45 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TM9SF3Q9HD45 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
TM9SF3Q9HD45 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.53■■□□□ 1.52
TM9SF3Q9HD45 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
TM9SF3Q9HD45 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.53■■□□□ 1.52
TM9SF3Q9HD45 AC010980.1-201ENST00000587192 1142 ntBASIC24.53■■□□□ 1.52
TM9SF3Q9HD45 AL451085.2-201ENST00000605085 799 ntBASIC24.53■■□□□ 1.52
TM9SF3Q9HD45 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TM9SF3Q9HD45 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TM9SF3Q9HD45 MIR6765-201ENST00000614092 87 ntBASIC24.51■■□□□ 1.51
TM9SF3Q9HD45 AL035685.1-201ENST00000636663 812 ntBASIC24.51■■□□□ 1.51
TM9SF3Q9HD45 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TM9SF3Q9HD45 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
TM9SF3Q9HD45 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TM9SF3Q9HD45 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TM9SF3Q9HD45 AC074183.2-201ENST00000623112 922 ntBASIC24.5■■□□□ 1.51
TM9SF3Q9HD45 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TM9SF3Q9HD45 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TM9SF3Q9HD45 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
TM9SF3Q9HD45 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TM9SF3Q9HD45 AC139795.1-202ENST00000500444 432 ntBASIC24.48■■□□□ 1.51
TM9SF3Q9HD45 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TM9SF3Q9HD45 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.48■■□□□ 1.51
TM9SF3Q9HD45 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC24.47■■□□□ 1.51
TM9SF3Q9HD45 KRT8P33-201ENST00000508125 1423 ntBASIC24.47■■□□□ 1.51
TM9SF3Q9HD45 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
TM9SF3Q9HD45 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.46■■□□□ 1.51
TM9SF3Q9HD45 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TM9SF3Q9HD45 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.46■■□□□ 1.51
TM9SF3Q9HD45 AC018755.3-202ENST00000596210 929 ntBASIC24.46■■□□□ 1.51
TM9SF3Q9HD45 AL359504.2-201ENST00000605506 1601 ntBASIC24.46■■□□□ 1.51
TM9SF3Q9HD45 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
TM9SF3Q9HD45 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
TM9SF3Q9HD45 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
TM9SF3Q9HD45 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.51
TM9SF3Q9HD45 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
TM9SF3Q9HD45 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.45■■□□□ 1.5
TM9SF3Q9HD45 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TM9SF3Q9HD45 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.45■■□□□ 1.5
TM9SF3Q9HD45 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.44■■□□□ 1.5
TM9SF3Q9HD45 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TM9SF3Q9HD45 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.43■■□□□ 1.5
TM9SF3Q9HD45 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.43■■□□□ 1.5
TM9SF3Q9HD45 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.43■■□□□ 1.5
TM9SF3Q9HD45 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms